Although I am not by trade a Fluid dynamist, I have made a brief study of the subject. Without any data to draw on however, it makes reaching a conclusion difficult.
To the question of why the McLaren always seems to have a higher top speed, and in effect don't run more wing to increase cornering speed, I imagine the issue comes from compromised efficiency of the rear wing. To me this is the only logical explanation for why they don't seem to run higher downforce levels.
We all know that the effect of the driver closing off the f-duct is to change the airflow over the rear wing, directing the flow through the slotted gap, reducing effective downforce. Now my question would be, how does the airflow change with cornering (air no longer flowing linearly across the car), and how does the rear work in an effective cross wind?
The stability of the McLaren in high, and especially medium speed corners this season has been nowhere near the level of the RBR. Is it possible that this is a direct consequence of the switched rear wing? It is highly possible that with variable airflow across the wing, in a non-linear approach, has the effect of creating varying levels of downforce through the corner. The difficulties that this bring would be analogues of the difficulty found with variable levels of downforce gained from the EBD on and off throttle.
Obviously, with this effect, the varying downforce levels would be more pronounced running higher wing angles on the switched rear wing. Is it possible that McLaren have found that the car actually gains better lap times running similar wing levels as the rest of the teams, and gaining a higher top speed, than it does going for a higher wing level, with a lower top speed, and more variable levels of downforce through the high and medium speed corners?
With the other teams, with a less effective f-duct system, maybe variable levels of rear downforce are less pronounced?
A further consequence of the switched rear wing would be exemplified in high speed corners. If you are carrying higher levels of wing and drag through those corners than is necessary, but are unable to switch the rear wing for fear of loosing all downforce, than of course you would simply not be as quick through those corners.
I guess my point is, that with the switched rear wing, it is all a question of compromise, and I imagine McLaren have been caught in no mans land, several times this season.