Recent events in F1 has shown the FIA in a less than favourable light, ie, Bahrain and this on/off blown diffuser issues. Whilst some may blame Todt for whatever goes on in F1, his job as head of the FIA is not just F1 related and the FIA are the gate keepers of the rules in F1, the FIA are not the originators of the rules, the teams all have a vote and when they and all interested parties are agreed on a set of rules, they are then passed to the FIA to be upheld.
Politics is a staple of F1 and as some comments have already mentioned, it's possible that Todt is more independant of B. Ecclestone than Bernie expected, thus, we end up with the scenario of Bahrain where the FOM (Bernie) lobbied for the re-enstatatement of the race, Max Mosley comes up against it with a legal point of view on the rules, then Bernie does a flip flop and blame Todt for something he himself advocated in the first place.
Max Mosley appears to be an efficient administrator of the sport, however, let's face it, this man is a dictator and that was the discription of Ferrari boss (Monti) about him, This man wanted to force all F1 teams into a budget cap of £40 Million without taking into consideration the carnage it would cause with established teams, the homologation of engines is one of his pet issues, we are now aware that these engines are not the same and thus can't be managed with a uniform (non EBD) rule.
Max Mosley was selective and arbitary in his judgements, for instance, McLaran were fined $100 million dollars (£50 million at that time) for being in posession of Ferrari's data but Renault were in posession of McLaren's data at the very same time, Renault, however faced no penalties.
On one hand there was a proposal for teams to be in a budget cap of £40 millions and on the other a vindictive penalty of £50 million for infringement of a rule when others are proven to have infringed the same rule.
The head of the FIA has to be seen to be even handed, not selective in judgements and vindictively malacious at the same time.
I had reservation about Todt taking over the FIA because of his Ferrari links, but let's face it, Ferrari will always be the centre piece of F1 as we know it, even with the latest Fiasco's I think Todt is more even handed a sports person that max would ever be in two life times..